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Academic Microarray Desktop Analyst Programs Each Package has different functions and sometime different views of microarray data. A further detailed listing of the features will be coming later. This list is not intended to be all encompassing if you have a favorite not listed send me an email (adboyd@umich.edu). R is a free statistical package released under the GNU license at http://www.r-project.org/ Compiled by Dr.
Andrew Boyd, MCBI |
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| Package | Source | Scripting | URL |
| Cluster/Treeview | Eisen lab; LNBL and UCB | No | http://rana.lbl.gov/EisenSoftware.htm |
| GeneCluster | Whitehead Institute | No | http://www-genome.wi.mit.edu/cancer/software/software.html |
| MAExplorer | NCI | Yes | http://www.lecb.ncifcrf.gov/MAExplorer/ |
| MultiExperiment Viewer (MEV) | TIGR | No | http://www.tigr.org/software/ |
| Xcluster* | Stanford/ Sherlock | ? | http://genome-www.stanford.edu/~sherlock/cluster.html |
| CLICK* | Tel-Aviv Univ | ? | http://www.cs.tau.ac.il/~rshamir/expander/expander.html |
| * Packages have
not been tested, awaiting legal department to sign off licensee agreement All other packages were loaded onto a Windows 2000 PC and functioned. |
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Academic Microarray Web Based Analyst Programs |
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| Package | Source | URL | |
| Expression Profiler | EBI | http://ep.ebi.ac.uk/EP/ | |
| Cleaver | Stanford/Altman | http://classify.stanford.edu/k-means.html | |
| Academic Microarray Statistical Packages in R |
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| Package | Source | URL | |
| SMA (Statistics for Microarray Analysis) | UC Berkley/Terry | http://www.stat.berkeley.edu/users/terry/zarray/Software/smacode.html | |
| Bioconductor | Harvard Medical School/ | http://www.bioconductor.org/ | |
| ANOVA | Jackson Laboratory/ Churchill | http://www.jax.org/staff/churchill/labsite/software/anova/index.html | |
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Last update
October 2, 2007 3:03 PM
Michigan Center for Biological Information (MCBI) ©2002 |